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Bioinformatics [edited by D...
The advances in genomic technologies, such as microarrays and high throughput sequencing,have expanded the realm of possibilities for capturing data and analyzing it using automatedcomputer driven bioinformatics tools. With the completion of the sequencing of genomes ofhuman and several model organisms, a quest for scientific discoveries being fueled byintegrative and multidimensional techniques in mathematics and computational sciences. Inthis volume, leading researchers and experts have provided an overview of significantconcepts from biological, mathematical, and com
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monografia Rebiun21523736 https://catalogo.rebiun.org/rebiun/record/Rebiun21523736 m o d | cr -n--------- 060707s2006 mau ob 000 0 eng d 2006048516 1-280-63599-1 9786610635993 0-08-046370-3 UPVA 997186925703706 CBUC 991010914008306709 MiAaPQ MiAaPQ MiAaPQ 572.80285 22 660.6 Bioinformatics electronic resource] edited by Dilip K. Arora, Randy M. Berka, Gautam B. Singh Boston Elsevier 2006 Boston Boston Elsevier 1 online resource (351 p.) 1 online resource (351 p.) Applied mycology and biotechnology v. 6 Description based upon print version of record Includes bibliographical references Front Cover; Title Page; Copyright Page; Editorial Board for Volume 6; Table of Contents; Contributors; Preface; SECTION A: PRINCIPLES; Chapter 1 Experimental Design and Analysis of Microarrary Data; 1. INTRODUCTION; 2. MICROARRAY PLATFORMS; 3. APPLICATIONS OF MICROARRAYS WITHINMYCOLOGY AND BIOTECHNOLOGY; 4. EXPERIMENTAL DESIGN OF MICROARRAY EXPERIMENTS; 5. SCANNING OF MICROARRAYS AND IMAGE PROCESSING; 6. ANALYSIS OF MICROARRAY DATA; 7. CONCLUSION; REFERENCES; Chapter 2 Methods for Protein Homology Modelling; 1. INTRODUCTION; 2. HOMOLOGY MODELLING; 3. PRACTICAL HOMOLOGY MODELLING 4. CONSIDERATIONS FOR MODELLING FUNGAL PROTEINS5. CONCLUSION; REFERENCES; Chapter 3 Phylogenetic Network Construction Approaches; 1. INTRODUCTION; 2. PHYLOGENETIC TREE RECONSTRUCTION METHODS; 3. EXISTING MECHANISMS OF RETICULATE EVOLUTION; 4. ALGORITHMS AND SOFTWARE FOR DETECTINGRETICULATE EVOLUTION; REFERENCES; Chapter 4 Issues in Comparative Fungal Genomics; 1. INTRODUCTION; 2. OWNERSHIP OF THE GENOMIC DATA; 3. HOMOLOGY; 4. COMPARATIVE GENOMICS; 5. PHYLOGENETICS; 6. UNIQUE TARGET SITES IN PESTS; 7. GENE PREDICTION AND GENE FUNCTION 8. COMPARATIVE GENOMICS BETWEEN FUNGI AND OTHER ORGANISMS9. FUNGAL COMPARATIVE GENOMICS; 10. FUNGAL COMPARATIVE GENOMICS - EVOLUTIONARY BIOLOGY; 11. FUNGAL COMPARATIVE GENOMICS - FUNGAL BIOLOGY; 12. FUNGAL COMPARATIVE GENOMICS - ESSENTIAL FUNGAL GENES; 13. FUNGAL COMPARATIVE GENOMICS - SMALL SCALE STUDIES; 14. CONCLUSION; REFERENCES; SECTION B: TOOLS; Chapter 5 Fungal Genomic Annotation; 1. INTRODUCTION; 2. Gene Discovery in the Fungi; 3. FUNCTIONAL ANNOTATION; 4. ANNOTATION PIPELINES; 5. MANUAL CURATION: IT TAKES A VILLAGE; 6. CONCLUSION; REFERENCES Chapter 6 Bioinformatics Packages for Sequence Analysis1. INTRODUCTION; 2. NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATION (NCBI); 3. SEQUENCE ANALYSIS TOOLS; 4. MOLECULAR DATABASE; 5. CONCLUSION; REFERENCES; Chapter 7 A Survey of Computational Methods Used in Microarray Data Interpretation; 1. INTRODUCTION; Chapter 8 Computational Methods in Genome Research; 2. MICROARRAY FORMALISM; 3. CLUSTERING; 4. BEYOND CLUSTERING; 5. TOOLS FOR MICROARRAY ANALYSIS; 6. CURRENT STATUS AND FUTURE APPLICATIONS OF MICROARRAY USAGE; 7. CONCLUSION; REFERENCES Chapter 9 Creating Fungal Pathway/Genome Databases Using Pathway ToolsAbstract; 1 Introduction; 2 Pathway Tools Computational Inferences; 3 Pathway/Genome Editors; 4 Analysis and Visualization; 5 Pathway Tools Ontologies; 6 Obtaining Pathway Tools and System Requirements; 7 How to Learn More; 8 Summary; 9 Acknowledgments; References; Chapter 10 Comparative Genomic Analysis of Glycoylation Pathways in Yeast, Plants and Higher Eukaryotes; 1. INTRODUCTION; 2. METABOLIC PATHWAY OF N-GLYCAN BIOSYNTHESIS; 3. DEFECTIVE MUTANTS; 4. THE DIVERSITY OF N-GLYCAN STRUCTURES 5. ENGINEERING THE GLYCOSYLATION PATHWAY The advances in genomic technologies, such as microarrays and high throughput sequencing,have expanded the realm of possibilities for capturing data and analyzing it using automatedcomputer driven bioinformatics tools. With the completion of the sequencing of genomes ofhuman and several model organisms, a quest for scientific discoveries being fueled byintegrative and multidimensional techniques in mathematics and computational sciences. Inthis volume, leading researchers and experts have provided an overview of significantconcepts from biological, mathematical, and com Bioinformatics Fungi Genomics Electronic books Arora, Dilip K. Berka, Randy M. 1954-) Singh, Gautam B. Applied mycology and biotechnology (CKB)1000000000292378 (DLC) (OCoLC) 1874-5334 0-444-51807-X Applied Mycology and Biotechnology